arviz.from_cmdstanpy#

arviz.from_cmdstanpy(posterior=None, *, posterior_predictive=None, predictions=None, prior=None, prior_predictive=None, observed_data=None, constant_data=None, predictions_constant_data=None, log_likelihood=None, index_origin=None, coords=None, dims=None, save_warmup=None, dtypes=None)[source]#

Convert CmdStanPy data into an InferenceData object.

For a usage example read the Creating InferenceData section on from_cmdstanpy

Parameters

posteriorCmdStanMCMC object: CmdStanPy CmdStanMCMC
posterior_predictivestr, list of str: Posterior predictive samples for the fit.
predictionsstr, list of str: Out of sample prediction samples for the fit.
priorCmdStanMCMC: CmdStanPy CmdStanMCMC
prior_predictivestr, list of str: Prior predictive samples for the fit.
observed_datadict: Observed data used in the sampling.
constant_datadict: Constant data used in the sampling.
predictions_constant_datadict: Constant data for predictions used in the sampling.
log_likelihoodstr, list of str, dict of {str: str}, optional: Pointwise log_likelihood for the data. If a dict, its keys should represent var_names from the corresponding observed data and its values the stan variable where the data is stored. By default, if a variable log_lik is present in the Stan model, it will be retrieved as pointwise log likelihood values. Use False or set data.log_likelihood to false to avoid this behaviour.
index_originint, optional: Starting value of integer coordinate values. Defaults to the value in rcParam data.index_origin.
coordsdict of str or dict of iterable: A dictionary containing the values that are used as index. The key is the name of the dimension, the values are the index values.
dimsdict of str or list of str: A mapping from variables to a list of coordinate names for the variable.
save_warmupbool: Save warmup iterations into InferenceData object, if found in the input files. If not defined, use default defined by the rcParams.
dtypes: dict or str or cmdstanpy.CmdStanModel: A dictionary containing dtype information (int, float) for parameters. If input is a string, it is assumed to be a model code or path to model code file. Model code can extracted from cmdstanpy.CmdStanModel object.

Returns

InferenceData object

arviz.from_cmdstan

arviz.from_emcee